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X-ray fluorescence (XRF) spectroscopy is a common technique in the field of heritage science. However, data processing and data interpretation remain a challenge as they are time consuming and often require a priori knowledge of the composition of the materials present in the analyzed objects. For this reason, we developed an open-source, unsupervised dictionary learning algorithm reducing the complexity of large datasets containing 10s of thousands of spectra and identifying patterns. The algorithm runs in Julia, a programming language that allows for faster data processing compared to Python and R. This approach quickly reduces the number of variables and creates correlated elemental maps, characteristic for pigments containing various elements or for pigment mixtures. This alternative approach creates an overcomplete dictionary which is learned from the input data itself, therefore reducing the a priori user knowledge. The feasibility of this method was first confirmed by applying it to a mock-up board containing various known pigment mixtures. The algorithm was then applied to a macro XRF (MA-XRF) data set obtained on an 18th century Mexican painting, and positively identified smalt (pigment characterized by the co-occurrence of cobalt, arsenic, bismuth, nickel, and potassium), mixtures of vermilion and lead white, and two complex conservation materials/interventions. Moreover, the algorithm identified correlated elements that were not identified using the traditional elemental maps approach without image processing. This approach proved very useful as it yielded the same conclusions as the traditional elemental maps approach followed by elemental maps comparison but with a much faster data processing time. Furthermore, no image processing or user manipulation was required to understand elemental correlation. This open-source, open-access, and thus freely available code running in a platform allowing faster processing and larger data sets represents a useful resource to understand better the pigments and mixtures used in historical paintings and their possible various conservation campaigns.more » « less
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X-ray fluorescence spectroscopy (XRF) plays an important role for elemental analysis in a wide range of scientific fields, especially in cultural heritage. XRF imaging, which uses a raster scan to acquire spectra pixel-wise across artworks, provides the opportunity for spatial analysis of pigment distributions based on their elemental composition. However, conventional XRF-based pigment identification relies on time-consuming elemental mapping facilitated by the interpretation of measured spectra by experts. To reduce the reliance on manual work, recent studies have applied machine learning techniques to cluster similar XRF spectra in data analysis and to identify the most likely pigments. Nevertheless, it is still challenging to implement automatic pigment identification strategies to directly tackle the complex structure of real paintings, e.g. pigment mixtures and layered pigments. In addition, pigment identification based on XRF on a pixel-by-pixel basis remains an obstacle due to the high noise level. Therefore, we developed a deep-learning based pigment identification framework to fully automate the process. In particular, this method offers high sensitivity to the underlying pigments and to the pigments present in low concentrations, therefore enabling robust mapping of pigments based on single-pixel XRF spectra. As case studies, we applied our framework to lab-prepared mock-up paintings and two 19th-century paintings: Paul Gauguin's Poèmes Barbares (1896) that contains layered pigments with an underlying painting, and Paul Cezanne's The Bathers (1899–1904). The pigment identification results demonstrated that our model achieved comparable results to the analysis by elemental mapping, suggesting the generalizability and stability of our model.more » « less
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Quantifying the number of charges on peptides bound to interfaces requires reliable estimates of (i) surface coverage and (ii) surface charge, both of which are notoriously difficult parameters to obtain, especially at solid/water interfaces. Here, we report the thermodynamics and electrostatics governing the interactions of l -lysine and l -arginine octamers (Lys 8 and Arg 8 ) with supported lipid bilayers prepared from a 9 : 1 mixture of 1,2-dimyristoyl- sn-glycero -3-phosphocholine (DMPC) and 1,2-dimyristoyl- sn -glycero-3-phospho-(1′-rac-glycerol) (sodium salt) (DMPG) from second harmonic generation (SHG) spectroscopy, quartz crystal microbalance with dissipation monitoring (QCM-D) and nanoplasmonic sensing (NPS) mass measurements, and atomistic simulations. The combined SHG/QCM-D/NPS approach provides interfacial charge density estimates from mean field theory for the attached peptides that are smaller by a factor of approximately two (0.12 ± 0.03 C m −2 for Lys 8 and 0.10 ± 0.02 C m −2 for Arg 8 ) relative to poly- l -lysine and poly- l -arginine. These results, along with atomistic simulations, indicate that the surface charge density of the supported lipid bilayer is neutralized by the attached cationic peptides. Moreover, the number of charges associated with each attached peptide is commensurate with those found in solution; that is, Lys 8 and Arg 8 are fully ionized when attached to the bilayer. Computer simulations indicate Lys 8 is more likely than Arg 8 to “stand-up” on the surface, interacting with lipid headgroups through one or two sidechains while Arg 8 is more likely to assume a “buried” conformation, interacting with the bilayer through up to six sidechains. Analysis of electrostatic potential and charge distribution from atomistic simulations suggests that the Gouy–Chapman model, which is widely used for mapping surface potential to surface charge, is semi-quantitatively valid; despite considerable orientational preference of interfacial water, the apparent dielectric constant for the interfacial solvent is about 30, due to the thermal fluctuation of the lipid–water interface.more » « less
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